User Manual - Running Parallel Programs with RMS and QsNet

Contents

• Chapter 1 - Introduction
  • Scope of Manual
  • Audience
  • Using this Manual
  • Related Information
  • Location of Online Documentation
  • Reader's Comments
  • Conventions
• Chapter 2 - Getting Started
  • Introduction
  • About RMS
  • Getting Started
  • Running a Parallel Program
• Chapter 3 - RMS User Commands
  • Introduction
  • More on Parallel Programs
  • Getting Resource Information with rinfo
  • Running Programs with prun
  • Allocating Resources with allocate
  • Running a Sequential Program with rmsexec
• Chapter 4 - MPI and Shmem Programming
  • Introduction
  • MPI Overview
  • Shmem Overview
  • Using TotalView
  • Using Vampir
  • MPI Example
  • Shmem Example
• Appendix A - RMS Commands
  • allocate
  • prun
  • pps
  • rinfo
  • rmsexec
  • rmsquery
• Appendix B - Submitting LSF Jobs
  • Overview of LSF/RMS Interaction
  • Setting Up Your Environment
  • The bsub command
  • Running Pre-Execution Programs
  • LSF Topology Scheduler
  • RMS Allocation Options Supported by LSF
  • How LSF Calculates Load Indices
  • Monitoring and Controlling LSF Jobs
  • Viewing Nodes Allocated To Your Job
  • LSF Job Termination Reason
• Appendix C - MPI Library Routines
  • Overview
  • MPI-2 One-Sided Support
  • Optimised Collectives
  • MPI-IO Support
  • MPI Command Line Arguments
  • Compiler Support
  • Support for -i8 and -r8 Fortran compiler flags
  • Fortran 90 Compiler Support
• Appendix D - Shmem Library Routines
  • Overview
• Appendix E - Elan Library Environment Variables
  • Important MPI and Shmem Settings
  • Troubleshooting
• Glossary
• Index